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IMA Annual Program Year Workshop

Development and Analysis of Multiscale Methods

November 3-7, 2008
Organizers:
Frank L. H. Brown Chemistry and Biochemistry, University of California
Anne M. Chaka Physical and Chemical Properties, National Institute of Standards and Technology
Gero Friesecke Mathematics, Technische Universität München
Kurt Kremer Max-Planck Institut für Polymerforschung
Yousef Saad Computer Science and Engineering, University of Minnesota

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Abstracts and Talk Materials Dining Guide

Description:

Theoretical, computational and experimental approaches to problems in natural sciences typically focus on particular aspects of the studied phenomena or systems. This is linked to the need to structure the questions with respect to the most relevant length and time scales. This need comes from the limited range of applicability of specific experimental as well as theoretical tools. In the past this has created huge progress and is the basis of our current understanding of physical, chemical and biological systems. For example, in the area of phase transitions and critical phenomena renormalization group theory has shown that many properties such as critical exponents or ratio of critical amplitudes does not depend on microscopic details of the studied system. This means that within each universality class, for many properties it is sufficient to study highly idealized model systems. However details of the models determine the transition temperature or the absolute amplitudes. Similar examples could be given in many other areas, for example the mechanical response of bulk solids, thin films or biological membranes are to a large extent governed by a small number of universal models but constitutive parameters depend crucially on the details of the underlying microstructure. In a computer simulation, in principle it would be possible to study systems on huge length scales and for long times (i.e. fracture mechanics based on an all atom simulation, function of a membrane protein in a fully fluctuating membrane etc.) if all the interactions would be fully treated and infinite CPU time would be available. While neither of the two is the case, such an ansatz probably also would produce too much information, obscuring a more general understanding.

Out of this, for several years now scale bridging or multiscale simulations methods are developed at many places. They are still in their infancy and the many different ideas did not converge into one or several generally accepted and validated schemes. Because of that, this fairly young and critical area of computational science can benefit greatly from advances in mathematics. Conversely, emerging computational experience on truly multiscale systems can serve as a great stimulus to mathematical understanding, which at present remains at its most thorough for two-scale systems (as treated, e.g., in classical and stochastic homogenization theory or Gamma-convergence).

Examples of truly multiscale systems include biological ion channels, proteins, emulsions, functional materials and quantum dots. They require new methods to address challenges such as hierarchies of structual organisation, fluctuating (electrostatic) fields, simultaneous treatment and interdependencies of very short and very long range interactions, and approximate Hamiltonians to model dynamics and reactivity of tens of thousands of atoms. In order to achieve this coupling schemes between different scales have to be developed which includes systematic coarse graining strategies, appropriate interaction potentials and force fields, and methods to link studies on different scales and tune the resolution of the computer model to coarser and finer resolution as needed. Ultimately such schemes have to include classical as well as quantum methods. All this requires new approaches beyond conventional computer modeling.

The workshop aims to address a number of exemplary questions. How does one parameterize coarse grained interaction potentials for bonded and nonbonded interactions? The latter is especially delicate for soft matter, because of the huge size of the molecules. What is the best point or regime in parameter and phase space to hand over from one to another level of description? How do errors propagate from one level to the next and what are the consequences when one wants to finegrain again? How specific or transferable are models and methods or are there general strategies to follow? Do we have strategies and general criteria for validation beyond trivial tests? Coarse graining means mapping of scales, but how does this work for nonequilibrium systems and time scales, i.e., for studying dynamics? All these questions will be addressed and discussed in terms of basic concepts as well as specific applications.

Schedule
Monday | Tuesday | Wednesday | Thursday | Friday
  Monday, November 3
Multiscale modeling in soft and biological matter, I
Session Chair: Frank L. H. Brown (University of California)
8:15am-9:00am Registration and coffee   EE/CS 3-176
9:00am-9:15am Welcome to the IMA Fadil Santosa (University of Minnesota) EE/CS 3-180
9:15am-10:00am Multiscale structural mechanics of viruses: Stretching the limits of continuum modeling William S. Klug (University of California, Los Angeles) EE/CS 3-180
10:00am-10:30am Coffee   EE/CS 3-176
10:30am-11:15am Coarse-graining of cholesterol containing lipid bilayers Mikko Karttunen (University of Western Ontario) EE/CS 3-180
11:15am-12:00pm Coarse-grained simulation studies of mesoscopic membrane phenomena Markus Deserno (Carnegie Mellon University) EE/CS 3-180
12:00pm-2:00pm Lunch    
2:00pm-2:45pm Soft coarse-grained models for multicomponent polymer melts: free energy and single-chain dynamics Marcus Müller (Georg-August-Universität zu Göttingen) EE/CS 3-180
2:45pm-3:30pm Simple models for biomembrane structure and dynamics Frank L. H. Brown (University of California, Santa Barbara) EE/CS 3-180
3:30pm-3:45pm Group Photo    
3:45pm-4:15pm Coffee   EE/CS 3-176
4:15pm-4:45pm Second chances   EE/CS 3-180
5:00pm-6:30pm Reception and Poster Session
Poster submissions welcome from all participants
Lind Hall 400
Ligand access/escape from protein cavities: A computational study of the insulin-phenol complex Cameron F. Abrams (Drexel University)
Charge transport in discotic liquid crystals: a multiscale computer simulation study Denis Andrienko (Max-Planck Institut für Polymerforschung)
Parallel multiscale simulation for crack propagation Olivier Coulaud (Institut National de Recherche en Informatique Automatique (INRIA))
A criterion to estimate the quality of the Mapping Scheme in Coarse-graining approaches Luigi Delle Site (Max-Planck Institut für Polymerforschung)
Realistic multiscale modeling of spatiotemporal behavior in surface reactions: Equation-free "heterogeneous coupled lattice-gas" (HCLG) simulations James W. Evans (Iowa State University)
Multiscale modeling of polystyrene in different environments Roland Faller (University of California, Davis)
Multiscale modeling of structure and phase behavior in heterogeneous lipid bilayers Roland Faller (University of California, Davis)
From atomistic to mesoscale systems without fitting: A coarse grained model for polystyrene Dominik Fritz (Max Planck Institute for Polymer Research)
From quantum to classical molecular dynamics Johannes Giannoulis (Technical University of Munich )
Comparative study of water: Atomistic vs. coarse-grained Christoph Junghans (Max-Planck Institut für Polymerforschung)
Techniques for coarse-grained modeling and mechanics of viral capsids William S. Klug (University of California, Los Angeles)
Effective dynamics using conditional expectations Frédéric Legoll (École Nationale des Ponts-et-Chaussées)
Force matching versus structural coarse-graining Alexander Lukyanov (Max-Planck Institut für Polymerforschung)
A new procedure to building stabilized explicit Runge-Kutta methods for large systems of ODEs Jesús Martín-Vaquero (University of Salamanca)
Quantifying chain reptation in entangled polymers by mapping atomistic simulation results onto the tube model Vlasis George Mavrantzas (University of Patras)
All-atom multiscale computational modeling of bionanosystem dynamics Stephen D Pankavich (University of Texas)
Adaptive resolution simulation of model mixtures Simon Poblete (Max Planck Institute for Polymer Research)
Charge transport in polypyrrole: the role of morphology Victor Rühle (Max Planck Institute for Polymer Research)
Spatial bounds on the effective complex permittivity for time-harmonic waves in random media Lyubima B. Simeonova (University of Utah)
General purpose molecular dynamics on graphic processing units (GPUs) Alex Travesset (Iowa State University)
Mesoscopic model for the fluctuating hydrodynamics of binary and ternary mixtures Erkan Tüzel (University of Minnesota)
A bloch band base level set method in the semi-classical limit of the Schroedinger Equation Zhongming Wang (University of California, San Diego)
  Tuesday, November 4
Molecular dynamics
Session Chair: Anne M. Chaka (National Institute of Standards and Technology)
8:30am-9:15am Coffee   EE/CS 3-176
9:15am-10:00am Coarse-grained and multiscale models of bulk liquids and macromolecules Teresa Head-Gordon (University of California, Berkeley) EE/CS 3-180
10:00am-10:30am Coffee   EE/CS 3-176
10:30am-11:15am Understanding effective molecular dynamics on timescales beyond possible simulation timescales Christof Schütte (Freie Universität Berlin) EE/CS 3-180
11:15am-12:00pm Lattice Boltzmann simulations of soft-matter systems Burkhard Dünweg (Max-Planck Institut für Polymerforschung) EE/CS 3-180
12:00pm-2:00pm Lunch    
2:00pm-2:45pm Multiscale modeling and simulation of soft matter materials Paul J. Atzberger (University of California, Santa Barbara) EE/CS 3-180
2:45pm-3:30pm Soft potentials for coarse grained modeling Ignacio Pagonabarraga Mora (University of Barcelona) EE/CS 3-180
3:30pm-4:00pm Coffee   EE/CS 3-176
4:00pm-4:30pm Second chances   EE/CS 3-180
  Wednesday, November 5
Mathematical aspects of scale-bridging
Session Chair: Gero Friesecke (Technische Universität München)
8:30am-9:15am Coffee   EE/CS 3-176
9:15am-10:00am Some representative issues in multiscale modeling Weinan E (Princeton University) EE/CS 3-180
10:00am-10:30am Coffee   EE/CS 3-176
10:30am-11:15am A general strategy for the design of seamless multiscale methods Eric Vanden-Eijnden (New York University) EE/CS 3-180
11:15am-12:00pm Predictive and efficient quasicontinuum methods Mitchell Luskin (University of Minnesota) EE/CS 3-180
12:00pm-2:00pm IMA Special Lunch    
2:00pm-2:45pm Variational coarse-graining of lattice systems Andrea Braides (Seconda Università di Roma "Tor Vergata") EE/CS 3-180
2:45pm-3:30pm Positive temperature coarse-graining of one-dimensional systems Claude Le Bris (CERMICS) EE/CS 3-180
3:30pm-4:00pm Coffee   EE/CS 3-176
4:00pm-4:30pm Second chances   EE/CS 3-180
  Thursday, November 6
Multiscale modeling in soft and biological matter, II
Session Chair: Kurt Kremer (Max-Planck Institut für Polymerforschung)
8:15am-8:45am Coffee   EE/CS 3-176
8:45am-9:30am A rigorous multiscale bridge connecting atomistic and coarse-grained models William G. Noid (Pennsylvania State University) EE/CS 3-180
9:30am-9:45am Grab a cup of coffee then proceed immediately to 331 Smith Hall for the 9:45am Moscowitz Lecture   EE/CS 3-176
9:45am-10:45am Michael Frisch Moscowitz Lecture (Chemistry Department)
author of the widely used Gaussian computer program (for electronic structure calculations (including some multiscale algorithms) and the President of Gaussian, Inc.]
  331 Smith Hall 
11:00am-11:45am Molecular dynamics in mesoscopic solvents Raymond Kapral (University of Toronto) EE/CS 3-180
11:45am-12:30pm Unveiling conformational changes of biological molecules using multiscale modeling and multiresolution experiments Florence Tama (University of Arizona) EE/CS 3-180
12:30pm-2:00pm Lunch    
2:00pm-2:45pm Multi-scale modeling of DNA Wilma K. Olson (Rutgers University) EE/CS 3-180
2:45pm-3:30pm Mapping molecular dynamics to mesoscopic models: Challenges at interfaces Mark O. Robbins (Johns Hopkins University) EE/CS 3-180
3:30pm-4:00pm Coffee   EE/CS 3-176
4:00pm-4:45pm Development of dynamic density functional theories of multiphase dense polymeric systems Toshihiro Kawakatsu (Tohoku University) EE/CS 3-180
4:45pm-5:15pm Second chances   EE/CS 3-180
7:00pm-8:30pm Workshop Dinner   Pagoda Restaurant
1417 4th St. SE
Minneapolis, MN
612-378-4710 
  Friday, November 7
Algorithmic aspects of scale-bridging
Session Chair: Yousef Saad (University of Minnesota)
8:30am-9:15am Coffee   EE/CS 3-176
9:15am-10:00am The adaptive resolution simulation scheme (AdResS): Basic principles and applications Luigi Delle Site (Max-Planck Institut für Polymerforschung) EE/CS 3-180
10:00am-10:30am Coffee   EE/CS 3-176
10:30am-11:15am Atomistic, mesoscopic and continuum hydrodynamics: coupling liquid models with different resolution Rafael Delgado-Buscalioni (Autonomous University of Madrid) EE/CS 3-180
11:15am-12:00pm Finding effective equations for heterogeneous multiscale methods Bjorn Engquist (University of Texas) EE/CS 3-180
12:00pm-12:30pm Second chances and closing remark   EE/CS 3-180

LIST OF CONFIRMED PARTICIPANTS

NameDepartmentAffiliation
Cameron F. AbramsDepartment of Chemicial Engineering Drexel University
Denis AndrienkoPolymer Theory Group Max-Planck Institut für Polymerforschung
Paul J. AtzbergerDepartment of Mathematics and Department of Mechanical Engineering University of California, Santa Barbara
Marian BoceaDepartment of Mathematics North Dakota State University
Nawaf Bou-RabeeDepartment of Applied and Computational Mathematics California Institute of Technology
Bastiaan J. BraamsChemistry Department Emory University
Andrea BraidesDipartimento di Matematica Seconda Università di Roma "Tor Vergata"
Frank L. H. BrownDepartment of Chemistry and Biochemistry University of California, Santa Barbara
Peter BruneDepartment of Computer Science University of Chicago
Maria-Carme T. CaldererSchool of Mathematics University of Minnesota
Hannah CallenderInstitute for Mathematics and its Applications University of Minnesota
Eric CancesENPC CERMICS
Xianjin ChenInstitute for Mathematics and its Applications University of Minnesota
Daniel M. ChipmanRadiation Laboratory University of Notre Dame
Marco CicaleseDepartment of Mathematics and Its Applications Università di Napoli "Federico II"
Ludovica Cecilia Cotta-RamusinoInstitute for Mathematics and its Applications University of Minnesota
Olivier Coulaud Institut National de Recherche en Informatique Automatique (INRIA)
Rafael Delgado-BuscalioniDepartamento de Fisica Teorica de la Materia Condensada Autonomous University of Madrid
Luigi Delle Site Max-Planck Institut für Polymerforschung
Markus DesernoDepartment of Physics Carnegie Mellon University
Masao DoiDepartment of Applied Physics University of Tokyo
Qiang DuDepartment of Mathematics Pennsylvania State University
Olivier DuboisInstitute for Mathematics and its Applications University of Minnesota
Burkhard Dünweg Max-Planck Institut für Polymerforschung
Weinan EDepartment of Mathematics and Applied Computational Mathematics Princeton University
Robert S. EisenbergDepartment of Molecular Biophysics and Physiology Rush University Medical Center
Bjorn EngquistDepartment of Mathematics University of Texas
Maria EstebanCeremade Université de Paris IX (Paris-Dauphine)
James W. EvansDepartment of Mathematics Iowa State University
Roland FallerDepartment of Chemical Engineering and Materials Science University of California, Davis
Daniel FlathDepartment of Mathematics and Computer Science Macalester College
Christopher FraserDepartment of Computer Science University of Chicago
Gero FrieseckeCenter for Mathematics Technical University of Munich
Dominik FritzPolymer Theory Group Max Planck Institute for Polymer Research
Weiguo GaoSchool of Mathematical Sciences Fudan University
Carlos J. Garcia-CerveraDepartment of Mathematics University of California, Santa Barbara
Johannes GiannoulisZentrum Mathematik Technical University of Munich
Jay GopalakrishnanDepartment of Mathematics University of Florida
Carsten HartmannInstitut für Mathematik Freie Universität Berlin
Timothy F. Havel Massachusetts Institute of Technology
Teresa Head-GordonBioengineering Department University of California, Berkeley
Mark S. HermanInstitute for Mathematics and its Applications University of Minnesota
Peter HinowInstitute for Mathematics and its Applications University of Minnesota
Yunkyong HyonInstitute for Mathematics and its Applications University of Minnesota
Mark IwenInstitute for Mathematics and its Applications University of Minnesota
Alexander IzzoDepartment of Mathematics and Statistics Bowling Green State University
Richard D. JamesDepartment of Aerospace Engineering and Mechanics University of Minnesota
Robert L. JerniganBaker Ctr for Bioinformatics and Biological Statistics Iowa State University
Srividhya JeyaramanInstitute for Mathematics and its Applications University of Minnesota
Lijian JiangInstitute for Mathematics and its Applications University of Minnesota
Sookyung JooDepartment of Applied Mathematics University of California, Santa Barbara
Christoph JunghansPolymer Theory Group Max-Planck Institut für Polymerforschung
Raymond KapralDepartment of Chemistry University of Toronto
Mikko KarttunenDepartment of Applied Mathematics University of Western Ontario
Toshihiro KawakatsuDepartment of Physics Tohoku University
William S. KlugDepartment of Mechanical and Aerospace Engineering University of California, Los Angeles
Robert V. KohnCourant Institute of Mathematical Sciences New York University
Kurt Kremer Max-Planck Institut für Polymerforschung
Anna KrylovDepartment of Chemistry University of Southern California
Monica H. LammChemical & Biological Engineering Department Iowa State University
Yueheng LanDepartment of Mechanical Engineering University of California, Santa Barbara
Juan C. LatorreDepartment of Mathematics and Computer Science Freie Universität Berlin
Claude Le BrisEcole Nationale des Ponts et Chaussées (ENPC) CERMICS
Chiun-Chang LeeDepartment of Mathematics National Taiwan University
Hijin LeeMathematics Department Korea Advanced Institute of Science and Technology (KAIST)
Frédéric LegollLAMI École Nationale des Ponts-et-Chaussées
Bo LiDepartment of Mathematics University of California, San Diego
Tong LiDepartment of Mathematics University of Iowa
Yongfeng LiInstitute for Mathematics and its Applications University of Minnesota
Tai-Chia LinDepartment of Mathematics National Taiwan University
Chun LiuInstitute for Mathematics and its Applications University of Minnesota
Hailiang LiuDepartment of Mathematics Iowa State University
Jian-Guo LiuPhysics Department Duke University
Mitchell LuskinSchool of Mathematics University of Minnesota
Dionisios MargetisDepartment of Mathematics University of Maryland
Vasileios MaroulasInstitute for Mathematics and its Applications University of Minnesota
Jesús Martín-VaqueroDepartamento de Matematica Aplicada University of Salamanca
Vlasis George MavrantzasDepartment of Chemical Engineering University of Patras
Susanna MontiInstitute for Physical Chemistry Processes Consiglio Nazionale delle Ricerche (CNR)
Marcus MüllerInstitut für Theoretische Physik Georg-August-Universität zu Göttingen
Olalla Nieto FazaDepartment of Chemistry University of Minnesota
William G. NoidDepartment of Chemistry Pennsylvania State University
Wilma K. OlsonDepartment of Chemistry and Chemical Biology Rutgers University
Isamu OnishiDepartment of Mathematical and Life Sciences Hiroshima University
Daniel Osei-KuffuorScientific Computation University of Minnesota
Ignacio Pagonabarraga MoraDepartament de Física Fonamental University of Barcelona
Stephen D PankavichDepartment of Mathematics University of Texas
Simon PobletePolymer Theory Group Max Planck Institute for Polymer Research
Cristina PopoviciDepartment of Mathematics North Dakota State University
Matej PraprotnikTheory Group Max Planck Institute for Polymer Research
Keith PromislowDepartment of Mathematics Michigan State University
Weiqing RenCourant Institute of Mathematical Sciences New York University
Mark O. RobbinsDepartment of Physics and Astronomy Johns Hopkins University
Victor Rühle Max Planck Institute for Polymer Research
Yousef SaadDepartment of Computer Science University of Minnesota
Fadil SantosaInstitute for Mathematics and its Applications University of Minnesota
Garikapati Narahari SastryMolecular Modeling Group Indian Institute of Chemical Technology
Andreas SavinLaboratoire de Chimie Théorique Université de Paris VI (Pierre et Marie Curie)
Arnd ScheelSchool of Mathematics University of Minnesota
Roman SchubertDepartment of Mathematics University of Bristol
Christof SchütteDepartment of Mathematics and Computer Science Freie Universität Berlin
L. Ridgway ScottDepartment of Computer Science University of Chicago
Tsvetanka SendovaInstitute for Mathematics and its Applications University of Minnesota
Yuk ShamCenter for Drug Design University of Minnesota
Heinz SiedentopMathematisches Institut Ludwig-Maximilians-Universität München
Lyubima B. SimeonovaDepartment of Mathematics University of Utah
Valery P. SmyshlyaevDepartment of Mathematical Sciences University of Bath
Andrew M. SteinInstitute for Mathematics and its Applications University of Minnesota
John M. StockieDepartment of Mathematics Simon Fraser University
Bo SuDepartment of Mathematics Iowa State University
Ellad B TadmorDepartment of Aersospace Engineering and Mechanics (AEM) University of Minnesota
Florence TamaDepartment of Biochemistry & Molecular Biophysics University of Arizona
Molei TaoDepartment of Control and Dynamical Systems California Institute of Technology
Alex TravessetDepartment of Physics and Astronomy Iowa State University
Donald G. TruhlarSupercomputer Institute and Department of Chemistry University of Minnesota
Erkan TüzelInstitute for Mathematics and its Applications University of Minnesota
Steven M. ValoneMaterial Science and Technology Division  Los Alamos National Laboratory
Eric Vanden-EijndenCourant Institute of Mathematical Sciences New York University
Bruce WadeDepartment of Mathematical Sciences University of Wisconsin
Zhian WangInstitute for Mathematics and its Applications University of Minnesota
Zhongming WangDepartment of Mathematics University of California, San Diego
Dexuan XieDepartment of Mathematical Sciences University of Wisconsin
Wei XiongInstitute for Mathematics and its Applications University of Minnesota
Chao YangComputational Research Division Lawrence Berkeley National Laboratory
Nung Kwan YipDepartment of Mathematics Purdue University
Haijun YuDepartment of Mathematics Purdue University
Jin YuDepartment of Physics University of California, Berkeley
Weigang ZhongInstitute for Mathematics and its Applications University of Minnesota